beeklion.blogg.se - Cellprofiler you must specify a pipeline filename to run

#CELLPROFILER YOU MUST SPECIFY A PIPELINE FILENAME TO RUN ZIP FILE#
#CELLPROFILER YOU MUST SPECIFY A PIPELINE FILENAME TO RUN UPDATE#
#CELLPROFILER YOU MUST SPECIFY A PIPELINE FILENAME TO RUN SKIN#

Sucic L, Galati-Fournier V, Kym U, Pfeifle V, Gros S, Schäfer KH, Holland-Cunz S, Keck S (2017).

Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence.

Barczak A, Avraham R, Singh S, Luo SS, Zhang WR, Bray MA, Hinman AE, Thompson M, Nietupski RM, Golas A, Montgomery P, Fitzgerald M, Smith RS, White DW, Tischler AD, Carpenter AE, and Hung DT (2017).

A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Painting assay.

Bray MA, Gustafsdottir SM, Ljosa V, Singh S, Sokolnicki KL, Bittker JA, Bodycombe NE, Dancík V, Hasaka TP, Hon CS, Kemp MM, Li K, Walpita D, Wawer MJ, Golub TR, Schreiber SL, Clemons PA, Shamji AF, Carpenter AE (2017).

Above and beyond C5a Receptor Targeting by Staphylococcal Leucotoxins: Retrograde Transport of Panton-Valentine Leucocidin and γ-Hemolysin. Zimmermann-Meisse G, Prévost G, Jover E (2017).Gomes-Alves AG, Maia AF, Cruz T, Castro H, Tomás AM (2018) Development of an automated image analysis protocol for quantification of intracellular forms of Leishmania spp.(includes pipeline and classifier files) (CellProfiler version 2.1.1).MeioSeed: a CellProfiler-based program to count fluorescent seeds for crossover frequency analysis in Arabidopsis thaliana. Van Tol N, Rolloos M, van Loon P, van der Zaal B.A novel method for automated assessment of megakaryocyte differentiation and proplatelet formation. Salzmann M, Hoesel B, Haase M, Mussbacher M, Schrottmaier WC, Kral-Pointner JB, Finsterbusch M, Mazharian A, Assinger A, Schmid JA (2018).Collar occupancy: A new quantitative imaging tool for morphometric analysis of oligodendrocytes. Bouçanova F, Maia AF, Cruz A, Millar V, Mendes Pinto I, Relvas JB, Domingues HS (2018).

#CELLPROFILER YOU MUST SPECIFY A PIPELINE FILENAME TO RUN SKIN#

Quantitative image analysis of protein expression and colocalisation in skin sections. Zhang H, Ericsson M, Virtanen M, Weström S, Wählby C, Vahlquist A, Törmä H (2018).

Quality Control for High-Throughput Imaging Experiments Using Machine Learning in Cellprofiler. Quantitative chromogenic immunohistochemical image analysis in cellprofiler software. Tollemar V, Tudzarovski N, Boberg E, Törnqvist Andrén A, Al-Adili A, Le Blanc K, Garming Legert K, Bottai M, Warfvinge G, Sugars RV.Tian R, Gachechiladze MA, Ludwig CH, Laurie MT, Hong, JY, Nathaniel,D, Prabhu AV, Fernandopulle MS, Patel R, Abshari M, Ward ME, Kampmann M (2019) CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons.Sanz G, Martínez-Aranda LM, Tesch PA, Fernandez-Gonzalo R, Lundberg TR (2019) Muscle2View, a CellProfiler pipeline for detection of the capillary-to-muscle fiber interface and high-content quantification of fiber type-specific histology.Mazzoleni V, Zimmermann‐Meisse G, Smirnova A, Tarassov I, Prévost G (2020) Staphylococcus aureus Panton‐Valentine Leukocidin triggers an alternative NETosis process targeting mitochondria.Microscopy Research & Technique. Epub ahead of print. Groiss S, Somvilla I, Daxböck C, Fuchs J, Lang-Olip I, Stiegler P, Leber B, Liegl-Atzwanger B, Brislinger D (2021) Quantification of increased MUC5AC expression in airway mucus of smoker using an automated image-based approach.Nanoparticles Formulation Improves the Antifibrogenic Effect of Quercetin on an Adenine-Induced Model of Chronic Kidney Disease. Sánchez-Jaramillo EA, Gasca-Lozano LE, Vera-Cruz JM, Hernández-Ortega LD, Gurrola-Díaz CM, Bastidas-Ramírez BE, Vargas-Guerrero B, Mena-Enríquez M, Martínez-Limón FJ, Salazar-Montes AM.European Journal of Endocrinology / European Federation of Endocrine Societies. Digital quantification of somatostatin receptor subtype 2a immunostaining: a validation study. Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities. Supplemental notes describing the pipelines.

#CELLPROFILER YOU MUST SPECIFY A PIPELINE FILENAME TO RUN ZIP FILE#

Please note that each download link contains a compressed ZIP file with the following: Please remember to give CellProfiler the proper citation in your paper. If you used CellProfiler in a publication and would like to post your pipelines here, please contact us we would be happy to host them.

#CELLPROFILER YOU MUST SPECIFY A PIPELINE FILENAME TO RUN UPDATE#

You can instead download the most current version of CellProfiler older pipelines should automatically update to the current version when loaded. Here, we provide links to pipelines used in some published studies, as well as the version of CellProfiler used to create them. CellProfiler enables reproducible research because a saved pipeline includes all the modules and settings.